PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G212200.1
Common NameB456_004G212200, bHLH062D, LOC105792224
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 629aa    MW: 70201.6 Da    PI: 6.2595
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G212200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.4e-13437483455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h   Er+RR++iN+++  L++l+P +      K +K++iL  ++eY++ L+
  Gorai.004G212200.1 437 NHVLSERKRREKINERLMMLKSLVPAN-----NKADKVSILDVTIEYLQALE 483
                         79999*********************7.....5***************9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.7E-5515197IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.974433482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-16436492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10436483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.90E-13437487No hitNo description
Gene3DG3DSA:4.10.280.104.8E-16437494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-15439488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MSTGVQHQER VPMNLKKQLA LAVRNIQWSY AIFWSISTRQ PGVLEWGEGY YNGDIKTRKT  60
VQAVELNTDQ LSLQRSEQLR QLYESLSAGE SSPQAKRPSA ALSPEDLTDT EWYYLVCMSF  120
VFNIGQGLPG RTLSSGQPVW LCNAHCADSK VFGRSLLAKS ASIQTVVCFP FSGGVVELGV  180
TDLVFEDLSL IQRVKTLLLD DPQPIVSKRS IQVDGMNNDL ACPALDPLIL ATKLSPILGC  240
EQLETVSPDD SPDGLEPKQS REDSLLIEGI NGGASQVQSW QFMDEEFSNC VHHSLNSSDC  300
ISQTIADHRK VVPLCRGEND NGLQDVEECN QTKLTSFDCQ NDDRHFHEVL SALFKSSHPL  360
ILGPQFRNSN KESSFIRWQK NGLVKPQKER DETPQKLLKK ILFLVPHMHD RGLIESPETN  420
AVRDAAWRPE ADEICGNHVL SERKRREKIN ERLMMLKSLV PANNKADKVS ILDVTIEYLQ  480
ALERRVAELE SCRKSEARTK IERTSDNYGN NKTNNGKKSS LSKRKAFYVV DEADQEIGYV  540
ASKDGSTDKV TLSMNNKELL IEFKCPWREG ILLEVMDALS ILNLDCHSVQ SSTTEGILSL  600
TIKSKYKGSS VAKAGPIEQA LQRIASKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A2e-152819824192Transcription factor MYC3
4rs9_A2e-152819824192Transcription factor MYC3
4rqw_B2e-152819824192Transcription factor MYC3
4rqw_A2e-152819824192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1441446ERKRRE
2442447RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3362800.0AF336280.1 Gossypium hirsutum GHDEL65 (ghdel65) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012476149.10.0PREDICTED: transcription factor EGL1 isoform X2
SwissprotQ9FN690.0GL3_ARATH; Transcription factor GLABRA 3
TrEMBLA0A0D2PFY90.0A0A0D2PFY9_G
STRINGPOPTR_0001s09450.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25922867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.10.0bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Yan Q, et al.
    The Basic/Helix-Loop-Helix Protein Family in Gossypium: Reference Genes and Their Evolution during Tetraploidization.
    PLoS ONE, 2015. 10(5): p. e0126558
    [PMID:25992947]